Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs146462379 | chr11:68459988 | C/T | 9.47E-10 | 177 | 15.57 | 14.02 | 2.2 | KM Plot |
| PAAD | rs146565554 | chr4:78451784 | A/T | 2.53E-5 | 178 | 15.57 | 14.63 | 3.9 | KM Plot |
| PAAD | rs146581997 | chr1:227363181 | ATACTT/A | 3.69E-5 | 177 | 15.53 | 15.43 | 3.9 | KM Plot |
| PAAD | rs146703426 | chr19:49346968 | G/A | 1.22E-12 | 174 | 16.17 | 12.87 | 1.37 | KM Plot |
| PAAD | rs146816535 | chr11:125507588 | TTTTG/T | 4.72E-5 | 178 | 16.03 | 11.6 | 4.1 | KM Plot |
| PAAD | rs146906534 | chr2:70459564 | C/A | 0 | 178 | 15.37 | 17.4 | 1.03 | KM Plot |
| PAAD | rs147007376 | chr11:125574385 | C/G | 0.000112 | 177 | 16.08 | 14.18 | 5.03 | KM Plot |
| PAAD | rs147066924 | chr11:34772837 | T/TTA | 5.41E-6 | 175 | 15.57 | 11.65 | 3.67 | KM Plot |
| PAAD | rs147131222 | chr5:111634658 | T/A | 6.61E-5 | 176 | 15.57 | 15.13 | 3.9 | KM Plot |
| PAAD | rs147172669 | chr2:70494071 | T/C | 0 | 178 | 15.33 | 18.43 | 1.03 | KM Plot |
| PAAD | rs147213994 | chr5:167727709 | CTT/C | 1.28E-7 | 171 | 15.62 | 12.98 | 3.17 | KM Plot |
| PAAD | rs147436210 | chr1:200522176 | A/G | 0 | 170 | 15.23 | 16.13 | 1.03 | KM Plot |
| PAAD | rs1476914 | chr17:54293906 | A/G | 2.83E-5 | 177 | 15.95 | 12.13 | 3.9 | KM Plot |
| PAAD | rs147729883 | chr1:227526118 | C/T | 9.98E-6 | 175 | 15.55 | 15.65 | 3.9 | KM Plot |
| PAAD | rs147770935 | chr5:141266024 | G/T | 2.97E-5 | 175 | 15.43 | 15.87 | 3.9 | KM Plot |